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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G04280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ARF | ||||||||
Protein Properties | Length: 918aa MW: 101811 Da PI: 6.3184 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78 | 1e-24 | 139 | 240 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++ LPERR02G04280.1 139 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 228 99*****************************86555544..8************************************************..78 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+++++r+ LPERR02G04280.1 229 DSNQLLLGIRRA 240 78889***9997 PP | |||||||
2 | Auxin_resp | 121.1 | 8.2e-40 | 265 | 348 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k LPERR02G04280.1 265 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVK 348 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.44E-48 | 124 | 268 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-42 | 131 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.08E-21 | 138 | 239 | No hit | No description |
PROSITE profile | PS50863 | 13.098 | 139 | 241 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.6E-23 | 139 | 240 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.3E-25 | 139 | 241 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.9E-34 | 265 | 348 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 9.8E-8 | 780 | 872 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.5E-7 | 784 | 863 | No hit | No description |
PROSITE profile | PS51745 | 24.082 | 787 | 871 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 918 aa Download sequence Send to blast |
MKLSPSAATG GGGSLPDQPA SPPEVAEEQK CLNSELWHAC AGPLVSLPAV GSRVVYFPQG 60 HSEQVAASTN KEMESQIPNY PNLPPQLICQ LHNVTMHADA ETDEVYAQMT LQPLSPQELK 120 DPFLPAELGT ASKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF TQQPPAQELM 180 AKDLHGNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNDS NQLLLGIRRA 240 NRPQTVMPSS VLSSDSMHIG LLAAAAHAAS TNSRFTIFYN PRASPSEFVI PLAKYVKAVY 300 HTRISVGMRF RMLFETEESS VRRYMGTITG ISDLDPVRWQ NSHWRSVKVG WDESTAGERQ 360 PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP TGLPSLYGGK EDDLTSSLMW LRDGQNSGFQ 420 SLNFGGLGMS PWMQPRLDTS LLGLQPDMYQ TIAAAAALQN TTKQVSPAML QFQQPQNIVG 480 RSLLSSQVLQ QAQPQFQQMY HQNINDNTIQ GHGQPEYLQQ SLQHCQSFNE QKPQLQPQQQ 540 HQESHQQQPQ CVQTPQHQQM QQQKHLSNFH PVPNALSVFS QLSSTPQSAP STLQTVSPFS 600 QQHNFPDTNI SCLSPSNVSS MHNALRPFPS EAASDLPGVP RITPVPVSDP WSSKRVAMES 660 AITSRPHAIS SQMENFDLTP SSIPQNSTLA PLPGRECLVD QDGGSDPQNH FLFGVNIDSQ 720 SLLMQDGIPS LHNDNVSNTI PYSTSNFLNP SQNDYQLNQT LTSPGCLDES EYAPCSDNAD 780 QVKRPPATFV KVYKSGTVGR LLDITRFSSY HELRSEVGRL FGLEGQLEDP LRSGWQLVFV 840 DREDDVLLVG DDPWQEFVNS VSCIKILSPQ EVQQMGKPGI ELFSTSARRL GNSCDNYMSR 900 QESRSLSTGI ASVGSVEF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-160 | 32 | 369 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070569 | 0.0 | AK070569.1 Oryza sativa Japonica Group cDNA clone:J023056C15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006646917.1 | 0.0 | PREDICTED: auxin response factor 6 | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | A0A0D9VCJ7 | 0.0 | A0A0D9VCJ7_9ORYZ; Auxin response factor | ||||
STRING | OB02G14210.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2012 | 36 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |